Every high school chemistry textbook I've seen actually works this way! It's horrible. The chapter starts with Dalton, works up through Rutherford and Bohr, and the last two or three I've seen ended there. Each section is presented as fact, and the kids are quizzed to make sure they know the material, before tearing it all down and teaching them a new bogus theory in the next section. Ugh.
I was taught atomic theory chronologically starting with the plum pudding model, then rutherford's model, then Bohr's model and finally the quantum models.
At each stage, the focus was on:
* What observations led the scientists in question to propose the model? e.g. in Rutherford's case, there was an extensive discussion on the gold-foil experiment, the observations he saw, and the conclusions he drew from it (e.g. that a lot of mass must be packed into a tiny space).
* What properties follow from adopting them model? e.g. with Rutherford's model, the notion of an accelerating charged particle (electron) would mean that the electron would continuously lose energy until it crashes into the nucleus. obviously this isn't happening.
* Repeat the cycle: how did bohr's model attempt to overcome these problems.
We did the same with the theories on acids and bases: how Arrhenius' concept required the notion of liquid to be present, how Bronsted and Lowry formulated it more generally as proton donation and acceptance, and how Lewis formulated it in terms of electrons.
I like that at each step, we learned WHY these models were proposed and how they explained the phenomena seen until then. We learned WHAT the consequences of making a physical model are, and we learned WHAT new observations could not be accounted for. Then we learned about how concepts are generalized to account for more information.
In contrast, if I had just been shown a beautiful but complex model at the beginning, I'm not sure I would have learned as much or held as much interest. The difference is like seeing a very elegant proof to a problem vs seeing the different half-correct approaches culminating into a final solution. I feel that if the goal is to teach people how to think like scientists, show them the process not the final result.
I last took chemistry in 10th grade, and I too was exposed to the progressive chronology of atomic theory.
While today I would appreciate it for what you point out, at the time, those lessons were lost on me, and I was a thoughtful kid. I think if the pedagogy were more oriented around the progess of the scientific method, it would have been fantastic.
It seemed misguided, though, in the context of a chemistry chapter on the nature of atoms. Let's also not fail to acknowledge that a gifted teacher can make all the difference in how a given approach might be, and I imagine that the more complex, contextual picture that respects that our understanding is still evolving would be superior in the hands of a gifted teacher.
Unlike say, physics, there is a big shortage of over-arching theories in chemistry. The field (in my experience of it, at least; about 5 semesters' worth) is mostly a collection of ad-hoc rules, with many exceptions and special cases. So I think the historical approach is more or less necessary for teaching these fields.
It works the same way as when bootstrapping a computer, where you have to load a bunch of fake "operating systems" (e.g. BIOS, Grub, early stages of init daemon) before you can run the latest version of the "real" OS. And after that, you will still progress mostly by patches.